read_cisbp {universalmotif} | R Documentation

## Import CIS-BP motifs.

### Description

Import CIS-BP formatted motifs. See http://cisbp.ccbr.utoronto.ca/index.php. Assumed to be DNA motifs.

### Usage

    read_cisbp(file, skip = 0)

### Arguments

`file` | `character(1)` File name.
`skip` | `numeric(1)` If not zero, will skip however many desired lines in the file before starting to read.

### Value

`list` universalmotif objects.

### Author(s)

Benjamin Jean-Marie Tremblay, b2tremblay@uwaterloo.ca

### References

Weirauch M, Yang A, Albu M, Cote A, Montenegro-Montero A, Drewe P, Najafabadi H, Lambert S, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano J, Galli M, Lewsey M, Huang E, Mukherjee T, Chen X, Reece-Hoyes J, Govindarajan S, Shaulsky G, Walhout A, Bouget F, Ratsch G, Larrondo L, Ecker J, Hughes T (2014). “Determination and inference of eukaryotic transcription factor sequence specificity.” Cell, 158, 1431-1443.

### See Also

Other read_motifs: `read_homer()`, `read_jaspar()`, `read_matrix()`, `read_meme()`, `read_motifs()`, `read_transfac()`, `read_uniprobe()`

### Examples

    cisbp <- read_cisbp(system.file("extdata", "cisbp.txt",
                                    package = "universalmotif"))

[Package universalmotif version 1.5.36 Index]