classicScore-class {topGO} | R Documentation

## Class "classicScore"

### Description

A class that extends the virtual class "groupStats" by adding a slot representing the score of each gene. It is used for tests like Kolmogorov-Smirnov test.

### Objects from the Class

Objects can be created by calls of the form `new("classicScore", testStatistic, name, allMembers, groupMembers, score, decreasing)`.

### Slots

`score`:

  Object of class `"numeric"` ~~

`name`:

  Object of class `"character"` ~~

`allMembers`:

  Object of class `"character"` ~~

`members`:

  Object of class `"character"` ~~

`testStatistic`:

  Object of class `"function"` ~~

`scoreOrder`:

  Object of class `"character"` ~~

`testStatPar`:

  Object of class `"ANY"` ~~

### Extends

Class `"groupStats"`, directly.

### Methods

allScore

  Method to obtain the score of all members.

scoreOrder

  Returns TRUE if the score should be ordered increasing, FALSE otherwise.

membersScore

  `signature(object = "classicScore")`: ...

rankMembers

  `signature(object = "classicScore")`: ...

score<-

  `signature(object = "classicScore")`: ...

### Author(s)

Adrian Alexa

### See Also

`classicCount-class`, `groupStats-class`, `getSigGroups-methods`

### Examples

    ## define the type of test you want to use
    test.stat <- new("classicScore", testStatistic = GOKSTest, name = "KS tests")

[Package topGO version 2.39.1 Index]