classicExpr-class {topGO} | R Documentation

## Class "classicExpr"

### Description

This class that extends the virtual class "groupStats" by adding two slots for accomodating gene expression data.

### Objects from the Class

Objects can be created by calls of the form `new("classicExpr", testStatistic, name, groupMembers, exprDat, pType, ...)`.

### Slots

`eData`:

  Object of class `"environment"` ~~

`pType`:

  Object of class `"factor"` ~~

`name`:

  Object of class `"character"` ~~

`allMembers`:

  Object of class `"character"` ~~

`members`:

  Object of class `"character"` ~~

`testStatistic`:

  Object of class `"function"` ~~

`testStatPar`:

  Object of class `"list"` ~~

### Extends

Class `"groupStats"`, directly.

### Methods

allMembers<-

  `signature(object = "classicExpr")`: ...

emptyExpr

  `signature(object = "classicExpr")`: ...

getSigGroups

  `signature(object = "topGOdata", test.stat = "classicExpr")`: ...

GOglobalTest

  `signature(object = "classicExpr")`: ...

initialize

  `signature(.Object = "classicExpr")`: ...

membersExpr

  `signature(object = "classicExpr")`: ...

pType<-

  `signature(object = "classicExpr")`: ...

pType

  `signature(object = "classicExpr")`: ...

### Author(s)

Adrian Alexa

### See Also

`classicScore-class`, `groupStats-class`, `getSigGroups-methods`

### Examples

    showClass("classicExpr")

[Package topGO version 2.39.1 Index]