classicCount-class {topGO} | R Documentation

## Class "classicCount"

### Description

This class that extends the virtual class "groupStats" by adding a slot representing the significant members.

### Details

This class is used for test statistic based on counts, like Fisher's exact test

### Objects from the Class

Objects can be created by calls of the form `new("classicCount", testStatistic = "function", name = "character", allMembers = "character", groupMembers = "character", sigMembers = "character")`.

### Slots

`significant`:

  Object of class `"integer"` ~~

`name`:

  Object of class `"character"` ~~

`allMembers`:

  Object of class `"character"` ~~

`members`:

  Object of class `"character"` ~~

`testStatistic`:

  Object of class `"function"` ~~

### Extends

Class `"groupStats"`, directly.

### Methods

contTable

  `signature(object = "classicCount")`: ...

initialize

  `signature(.Object = "classicCount")`: ...

numSigAll

  `signature(object = "classicCount")`: ...

numSigMembers

  `signature(object = "classicCount")`: ...

sigAllMembers

  `signature(object = "classicCount")`: ...

sigMembers<-

  `signature(object = "classicCount")`: ...

sigMembers

  `signature(object = "classicCount")`: ...

### Author(s)

Adrian Alexa

### See Also

`classicScore-class`, `groupStats-class`, `getSigGroups-methods`

### Examples

    ##---- Should be DIRECTLY executable !! ----

[Package topGO version 2.39.1 Index]