deconvolve_cellularity,tidybulk-method {tidybulk} | R Documentation

## deconvolve_cellularity

### Description

deconvolve_cellularity

### Usage

    ## S4 method for signature 'tidybulk'
    deconvolve_cellularity(
      .data,
      .sample = NULL,
      .transcript = NULL,
      .abundance = NULL,
      reference = X_cibersort,
      method = "cibersort",
      action = "add",
      ...
    )

### Arguments

`.data` | A 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`reference` | A data frame. The transcript/cell_type data frame of integer transcript abundance
`method` | A character string. The method to be used. At the moment Cibersort (default) and llsr (linear least squares regression) are available.
`action` | A character string. Whether to join the new information to the input tbl (add), or just get the non-redundant tbl with the new information (get).
`...` | Further parameters passed to the function Cibersort

### Value

A 'tbl' object including additional columns for each cell type estimated

[Package tidybulk version 0.99.23 Index]