get_adjusted_counts_for_unwanted_variation_bulk {tidybulk} | R Documentation

## Get adjusted count for some batch effect

### Description

Get adjusted count for some batch effect

### Usage

    get_adjusted_counts_for_unwanted_variation_bulk(
      .data,
      .formula,
      .sample = NULL,
      .transcript = NULL,
      .abundance = NULL,
      log_transform = TRUE,
      ...
    )

### Arguments

`.data` | A tibble
`.formula` | a formula with no response variable, of the kind ~ factor_of_intrest + batch
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`log_transform` | A boolean, whether the value should be log-transformed (e.g., TRUE for RNA sequencing data)
`...` | Further parameters passed to the function sva::ComBat

### Value

A tibble with adjusted counts

[Package tidybulk version 0.99.23 Index]