tidybulk_SAM_BAM {tidybulk} | R Documentation

## Creates a 'tt' object from a list of file names of BAM/SAM

### Description

tidybulk_SAM_BAM() creates a 'tt' object from a 'tbl' formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

### Usage

    tidybulk_SAM_BAM(file_names, genome = "hg38", ...)

### Arguments

`file_names` | A character vector
`genome` | A character string
`...` | Further parameters passed to the function Rsubread::featureCounts

### Details

This function is based on FeatureCounts package. This function created a tidybulk object and is useful if you want to avoid to specify .sample, .transcript and .abundance arguments all the times. The tidybulk object have an attribute called tt_internals where these three arguments are stored as metadata. They can be extracted as attr(<object>, "tt_internals").

### Value

A 'tidybulk' object

[Package tidybulk version 0.99.23 Index]