get_cell_type_proportions {tidybulk} | R Documentation

## Get cell type proportions from cibersort

### Description

Get cell type proportions from cibersort

### Usage

    get_cell_type_proportions(
      .data,
      .sample = NULL,
      .transcript = NULL,
      .abundance = NULL,
      reference = X_cibersort,
      method = "cibersort",
      ...
    )

### Arguments

`.data` | A tibble
`.sample` | The name of the sample column
`.transcript` | The name of the transcript/gene column
`.abundance` | The name of the transcript/gene abundance column
`reference` | A data frame. The transcript/cell_type data frame of integer transcript abundance
`method` | A character string. The method to be used. At the moment Cibersort (default) and llsr (linear least squares regression) are available.
`...` | Further parameters passed to the function Cibersort

### Value

A tibble including additional columns

[Package tidybulk version 0.99.23 Index]