fold_change {structToolbox} | R Documentation

## fold change class

### Description

Calculates fold change between groups for all features in a DatasetExperiment, based on a log transform and t-test.

### Usage

    fold_change(
      alpha = 0.05,
      factor_name,
      paired = FALSE,
      sample_name = character(0),
      threshold = 2,
      control_group = character(0),
      ...
    )

### Arguments

`alpha` | confidence level to use for intervals
`factor_name` | the sample_meta column to use
`paired` | TRUE or [FALSE] to account for paired samples
`sample_name` | the sample_meta column name to use for a paired samples
`threshold` | a threshold to define fold change as 'significant'.
`control_group` | a level of factor name to use as the control group for calculations.
`...` | additional slots and values passed to struct_class

### Value

struct object

### Examples

    D = MTBLS79_DatasetExperiment()
    M = fold_change(factor_name='class')
    M = model_apply(M,D)

[Package structToolbox version 0.99.8 Index]