ctxsearch {ssrch} | R Documentation

## ssrch demo with metadata documents from 68 cancer transcriptomics studies

### Description

ssrch demo with metadata documents from 68 cancer transcriptomics studies

### Usage

    ctxsearch()

### Value

Simply starts an app.

### Note

The metadata were derived by extracting sample.attributes fields from a search with github.com/seandavi/SRAdbV2. The sample.attributes content varies between studies and sometimes between experiments within studies. The field sets were unified with the sampleAtts function of github.com/vjcitn/HumanTranscriptomeCompendium. After unification records were stacked and CSVs were written.

### Examples

    if (interactive()) {
      oask = options()$example.ask
      options(example.ask=FALSE)
      try(ctxsearch2())
      options(example.ask=oask)
    }

[Package ssrch version 1.3.0 Index]