plotUMAP {singleCellTK} | R Documentation

## Plot UMAP results either on already run results or run first and then plot.

### Description

Plot UMAP results either on already run results or run first and then plot.

### Usage

    plotUMAP(inSCE, colorBy = "No Color", shape = "No Shape",
      reducedDimName = "UMAP", runUMAP = FALSE, useAssay = "logcounts")

### Arguments

`inSCE` | Input SCtkExperiment object with saved dimension reduction components or a variable with saved results. Required
`colorBy` | color by a condition(any column of the annotation data).
`shape` | add shapes to each condition.
`reducedDimName` | saved dimension reduction name in the SCtkExperiment object. Required.
`runUMAP` | If the dimension reduction components are already available set this to FALSE, otherwise set to TRUE. Default is False.
`useAssay` | Indicate which assay to use. The default is "logcounts"

### Value

a UMAP plot of the reduced dimensions.

### Examples

    plotUMAP(mouseBrainSubsetSCE, shape = "No Shape", reducedDimName = "UMAP",
             runUMAP = TRUE, useAssay = "counts")

[Package singleCellTK version 1.7.0 Index]