SigSet-class {sesame} | R Documentation

## SigSet class

### Description

This is the main data class for SeSAMe. The class holds different classes of signal intensities.

The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".

The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".

### Usage

    ## S4 method for signature 'SigSet'
    initialize(.Object, platform, ...)

    SigSet(...)

### Arguments

`.Object` | target object
`platform` | "EPIC", "HM450", "HM27" or other strings for custom arrays
`...` | additional arguments

### Details

The NBeads* slots are normally left empty but can be optionally turned on.

### Value

a `SigSet` object

a `SigSet` object

### Slots

`IG`

  intensity table for type I probes in green channel

`IR`

  intensity table for type I probes in red channel

`IGG`

  Type-I green that is inferred to be green

`IRR`

  Type-I red that is inferred to be red

`II`

  intensity table for type II probes

`oobG`

  out-of-band probes in green channel

`oobR`

  out-of-band probes in red channel

`NBeadsIG`

  Number of Beads for Infinium I green channel

`NBeadsIR`

  Number of Beads for Infinium I red channel

`NBeadsII`

  Number of Beads for Infinium II

`ctl`

  all the control probe intensities

`pval`

  named numeric vector of p-values

`platform`

  "EPIC", "HM450" or "HM27"

### Examples

    ## Create an empty EPIC object.
    SigSet("EPIC")
    SigSet('EPIC')

[Package sesame version 1.5.3 Index]