3b07e70ce82450cc7d7c4b95135bfbe3 *DESCRIPTION
542fee070718010bc2bc88fc368cbf7b *INDEX
0e6998dccf2e1a257c3a2f3188966d68 *LICENSE
7f2bbd0ab22e4f1ad61ce3d8463c759c *Meta/Rd.rds
66abedb13d38e9682d4b5125d7ef0e61 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
f3c90350144ab2a6665a6cd0ae6c64f2 *Meta/hsearch.rds
0bf389b3004ccae6157e7e70381c79ee *Meta/links.rds
308a08e171ca7d2a7382f1fb5cf6d82d *Meta/nsInfo.rds
8835f2739ef89447129b4b1b253afbb7 *Meta/package.rds
ea65202ca8aad6c07b3306c175c72c23 *Meta/vignette.rds
4241f5b5171e47d5150bad01ae0c0cef *NAMESPACE
7e3fdc80a9f02aa5dcd26929bb124793 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/scruff
52dfd39c7485e4de6689d934d14654e6 *R/scruff.rdb
aac8013f7673df65a5ed09b7c1613040 *R/scruff.rdx
c66ae87875fdac98dad8e6ab4b0f4676 *data/bamExample.rda
fcb4e82f263128042dadf13f0fab612f *data/barcodeExample.rda
89bc6ff8fb0bef0f4510654ca33eecb0 *data/cbtop10000.rda
e51860626d7cfc5556a151308a61f77e *data/sceExample.rda
fcfc07765b48350083f125a31070c35f *data/validCb.rda
d9a760b6e23582f9932edcc084a0deaa *doc/index.html
25f8655ec6fc81bcb314059db7205de2 *doc/scruff.R
3196646b89dee8349192bdaed9f2c155 *doc/scruff.Rmd
d8225353e8c8845f92f98841d21317f8 *doc/scruff.html
c0b8b94c37ead1dd7feed0186747e53b *extdata/GRCm38_MT.fa
09e36a1c6a9f668a2487ec5c58ce1b9c *extdata/GRCm38_MT.gtf
b505b41fd5718ffd3eb71813d0d4fcae *extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam
74abe8130c02e803e66c0e3b57201761 *extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv
0fdf95c3beb5eff50934204c6109adf2 *extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
983a0032d33116c75363d1d1efa54275 *extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
d3aa0aa1d9520b603e8aa7f78d039b27 *help/AnIndex
a12b36855e1185ae8be60624aa28679d *help/aliases.rds
eff745bbd3fa88aaf02353564b28a9ae *help/paths.rds
02ac86ffcf2e41df00f8e9e7cc238245 *help/scruff.rdb
e597bb64d15ee633120345781b3fd71e *help/scruff.rdx
b230ac8bd217354c295dc148887bb40c *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
c6201c7c547b891339751148bfd5f3ef *html/alignRsubread.html
69f59ec7083fec9270ec9a9d635ae0b3 *html/bamExample.html
b68c877c56f0e3bfa578523a799a7932 *html/barcodeExample.html
6a6ee405f2b17995e45a4fdd53474579 *html/cbtop10000.html
d2fbbebfb9b69ea94b2f69c70309a7ef *html/countUMI.html
97263f3e38e1c2fa2409b3e3ac62ef40 *html/demultiplex.html
325780d6b0c3584f4a61ea6431441979 *html/gview.html
0e75617d7cd874ae4c7f7b743ec01e35 *html/qcplots.html
bd3626cfda36787586aa3b58ad33727a *html/rview.html
1beaa4090083962bc9231aeaf17932e1 *html/sceExample.html
c4585b21f9e88c803d05dab86809c517 *html/scruff.html
c9fcf5e9c7def180ff1b37c6cf6df516 *html/tenxBamqc.html
2170024d478c6e89d112fa4269f26ae5 *html/validCb.html
