scDatExSim {scDD} | R Documentation

## Data: Toy example of simulated data

### Description

Toy example data in `SingleCellExperiment` format for 500 genes to illustrate how to generate simulated data from example data using `simulateSet`. Contains 5 genes from each category (DE, DP, DM, DB, EE, and EP).

### Usage

    data(scDatExSim)

### Format

An object of class `SingleCellExperiment` containing data for 30 genes for 200 samples (100 from condition 1 and 100 from condition 2). Condition labels (1 or 2) are stored in the colData slot. Row names of the assayData slot contain the two letter category label that the gene was simulated from (e.g. 'EE', 'DB', ...) along with the row number (1-30).

### Value

An RData object, see Format section for details

### References

Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 2016 Oct 25;17(1):222. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1077-y

### Examples

    # load toy example of simulated data
    data(scDatExSim)

[Package scDD version 1.11.1 Index]