sracipePlotParamBifur {sRACIPE} | R Documentation

## Parameter bifurcation plots

### Description

Plot the expression of the genes against parameter values to understand the effect of parameters on the gene expressions.

### Usage

    sracipePlotParamBifur(
      .object,
      paramName,
      data = NULL,
      paramValue = NULL,
      assignedClusters = NULL,
      plotToFile = FALSE
    )

    ## S4 method for signature 'RacipeSE'
    sracipePlotParamBifur(
      .object,
      paramName,
      data = NULL,
      paramValue = NULL,
      assignedClusters = NULL,
      plotToFile = FALSE
    )

### Arguments

`.object` | RacipeSE object generated by `sracipeSimulate` function.
`paramName` | character. The name of the parameter to be plotted.
`data` | (optional) dataframe. Default rSet geneExpression. The data to be plotted. For example, use rSet$stochasticSimulations$[noise] to plot the stochastic data.
`paramValue` | (optional) Dataframe. The parameter values if rSet$params is not to be used.
`assignedClusters` | (optional) Dataframe. The cluster assignment of data.
`plotToFile` | (optional) logical. Default `FALSE`. Whether to save plots to a file.

### Value

none

### Examples

    data("demoCircuit")
    ## Not run:
    rSet <- sRACIPE::sracipeSimulate(circuit = demoCircuit, numModels = 100,
    plots=FALSE, plotToFile = FALSE)
    rSet <- sRACIPE::sracipeNormalize(rSet)
    sracipePlotParamBifur(rSet, "G_A")

    ## End(Not run)

[Package sRACIPE version 1.3.3 Index]