sracipeCircuit<- {sRACIPE} | R Documentation

## Initialize the circuit

### Description

Initialize the circuit from a topology file or a `data.frame` A typical topology file looks like

Source | Target | Type
geneA | geneB | 2
geneB | geneC | 1
geneB | geneA | 2

Here the regulation type is specified by number - activation: `1`, inhibition: `2`

### Usage

    sracipeCircuit(.object) <- value

    ## S4 replacement method for signature 'RacipeSE'
    sracipeCircuit(.object) <- value

### Arguments

`.object` | RacipeSE object
`value` | data.frame containing the circuit information

### Value

data.frame

### Related Functions

`sracipeSimulate`, `sracipeKnockDown`, `sracipeOverExp`, `sracipePlotData`

### Examples

    RacipeSet <- RacipeSE()
    data("demoCircuit")
    sracipeCircuit(RacipeSet) <- demoCircuit
    sracipeCircuit(RacipeSet)
    rm(RacipeSet, demoCircuit)

[Package sRACIPE version 1.3.3 Index]