PAmotif {ribosomeProfilingQC} | R Documentation

## Metaplot of P site distribution

### Description

Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.

### Usage

    PAmotif(reads, genome, plot = TRUE)

### Arguments

`reads` | Output of assignReadingFrame or shiftReadsByFrame.
`genome` | A BSgenome object.
`plot` | Plot the motif or not.

### Value

A pcm object

### Examples

    pcs <- readRDS(system.file("extdata", "samplePc.rds",
                   package="ribosomeProfilingQC"))
    library(BSgenome.Drerio.UCSC.danRer10)
    PAmotif(pcs, Drerio)

[Package ribosomeProfilingQC version 0.99.9 Index]