barplotTimeCoverage {pulsedSilac} | R Documentation

## Number of detected features per sample

### Description

How many proteins/peptides are detected in each sample. Anything else than NA is considered detected.

### Usage

    barplotTimeCoverage(x, ...)

    ## S4 method for signature 'SilacProteinExperiment'
    barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

    ## S4 method for signature 'SilacPeptideExperiment'
    barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

    ## S4 method for signature 'SilacProteomicsExperiment'
    barplotTimeCoverage(x, assayName, returnDataFrame = FALSE, conditionCol)

### Arguments

`x` | A `SilacProteinExperiment`, `SilacPeptideExperiment` or a `SilacProteomicsExperiment` object.
`...` | Unused.
`assayName` | Name of the assay to use in the plot.
`returnDataFrame` | A `logical` indicating if the `data.frame` used for the plot should be returned instead.
`conditionCol` | A `character`, which indicates the column name in colData(x) that defines the different experiment conditions.

### Value

A barplot or a `data.frame`.

### Examples

    data('wormsPE')
    barplotTimeCoverage(wormsPE, assayName = 'ratio')

[Package pulsedSilac version 1.1.4 Index]