NetworkAnalysedPerturbationData-class {perturbatr} | R Documentation

## Data wrapper for analysed perturbation data using network diffusion

### Description

Class `NetworkAnalysedPerturbationData` is a wrapper for various objects of an analysis of a perturbation experiment done using network diffusion. Class `NetworkAnalysedPerturbationData` exposes getters for its members of the same name, but no setters, because the data should be treated as constant once set. Objects of class `NetworkAnalysedPerturbationData` do not need to be constructed manually but are returned from calling `diffuse` (see the examples).

### Slots

`initialModel`

  the model that was provided for analysis

`graph`

  an igraph object that served for the diffusion process

### Examples

     data(rnaiscreen)
     hm.fit <- hm(rnaiscreen)

     graph <- readRDS(system.file(
       "extdata", "graph_small.rds", package = "perturbatr"))
     res <- diffuse(hm.fit, graph=graph, r=1)

[Package perturbatr version 1.7.0 Index]