training_human {peco} | R Documentation

## Training data from 888 single-cell samples and 101 top cyclic genes

### Description

Pre-computed results. Applied fit_cyclic_many to 888 single-cell samples that have both normalized gene expression values and cell cycle labels to obtain training results that can be used as input for predicting cell cycle phase in other data.

### Usage

    data(training_human)

### Format

A list with the follwing elements

predict.yy

  Estimated cyclic expression values in the training data

cellcycle_peco_ordered

  Training labels ordered from 0 to 2pi

cell_cycle function

  Nonparametric function of cyclic gene expression trend obtained by trendfilter function in genlasso

pve

  Proportion of variance explained in each gene by the cell cycl phase label

[Package peco version 0.99.16 Index]