plotConsProfiles {pRoloc} | R Documentation

## Plot marker consenses profiles.

### Description

The function plots marker consensus profiles obtained from mrkConsProfile

### Usage

    plotConsProfiles(object, order = NULL, plot = TRUE)

### Arguments

`object` | A `matrix` containing marker consensus profiles as output from `mrkConsProfiles()`.
`order` | Order for markers (optional).
`plot` | A `logical(1)` defining whether the heatmap should be plotted. Default is `TRUE`.

### Value

Invisibly returns `ggplot2` object.

### Author(s)

Tom Smith

### Examples

    library("pRolocdata")
    data(E14TG2aS1)
    hc <- mrkHClust(E14TG2aS1, plot = FALSE)
    mm <- getMarkerClasses(E14TG2aS1)
    ord <- levels(factor(mm))[order.dendrogram(hc)]
    fmat <- mrkConsProfiles(E14TG2aS1)
    plotConsProfiles(fmat, order = ord)

[Package pRoloc version 1.27.6 Index]