gs_add_gating_method_init {openCyto} | R Documentation

## Clear history of `gs_add_gating_method` calls for a given `GatingSet` or `GatingSetList`

### Description

Repeated calls to the `load_gs` method in the same session will yield indistinguishable objects that can result in overlapping history of `gs_add_gating_method` calls. This method allows for the history to be cleared if the user would like to reload the `GatingSet` and start fresh. Calling `gs_add_gating_method_init` without an argument will clear the entire `gs_add_gating_method` history.

### Usage

    gs_add_gating_method_init(gs)

### Arguments

`gs` | a `GatingSet` or `GatingSetList`. Can be omitted to clean entire `gs_add_gating_method` history.

### Examples

    ## Not run:
    # load in a GatingSet
    gs <- load_gs(path)
    # Add some nodes using gs_add_gating_method
    gs_add_gating_method(gs, gating_method = "mindensity", dims = "CCR7,CD45RA", parent = "cd4-cd8+", pop = "CCR7+/-CD45RA+/-")
    gs_add_gating_method(gs, gating_method = "polyFunctions", parent = "cd8", gating_args = "cd8/IFNg:cd8/IL2:cd8/TNFa")
    # Remove the effect of the last gs_add_gating_method call using gs_remove_gating_method (note that the first call's effects remain)
    gs_remove_gating_method(gs)
    # Re-load the GatingSet to start over
    gs <- load_gs(path)

    # At this point, gs will still see the history of the first gs_add_gating_method call above
    # which will cause problems for later calls to gs_remove_gating_method.
    # To fix that, just call gs_add_gating_method_init() to start a clean history
    gs_add_gating_method_init(gs)
    # Now you can continue using gs_add_gating_method and gs_remove_gating_method from scratch
    gs_add_gating_method(gs, gating_method = "mindensity", dims = "CCR7,CD45RA", parent = "cd4-cd8+", pop = "CCR7+/-CD45RA+/-")

    ## End(Not run)

[Package openCyto version 1.99.2 Index]