MD_composite {multiHiCcompare} | R Documentation

## Plot a composite MD plot with the results of a comparison

### Description

Plot a composite MD plot with the results of a comparison

### Usage

    MD_composite(hicexp, plot.chr = NA, D.range = 1)

### Arguments

`hicexp` | A hicexp object which has had a multiHiCcompare comparison step performed on it.
`plot.chr` | A specific chromosome or set of chromosome which you want to plot. This should be a numeric value, i.e. to plot chromosome 1 set plot.chr = 1, to plot chromosomes 1 and 5 set plot.chr = c(1, 5). Defaults to NA indicating that all chromosomes present in the hicexp will be plotted.
`D.range` | Allows for subsetting of the plot by Distance. Set to proportion of total distance that you want to be displayed. Value of 1 indicates that the entire distance range will be displayed. Defaults to 1.

### Value

An MD plot

### Examples

    data("hicexp_diff")
    MD_composite(hicexp_diff)

[Package multiHiCcompare version 1.5.0 Index]