# msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

## Documentation for package ‘msgbsR’ version 1.11.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

msgbsR-package | msgbsR
checkCuts | checkCuts
cuts | A GRanges object of differentially methylated MspI cut sites on chromosome 20 in Rat from a MS-GBS experiment.
diffMeth | diffMeth
msgbsR | msgbsR
plotCircos | plotCircos
plotCounts | plotCounts
ratdata | Read counts of potential MspI cut sites from a MS-GBS experiment of prostates from rats
ratdata2 | Read counts of correct MspI cut sites from a MS-GBS experiment of prostates from rats
rawCounts | rawCounts