dcf427f22f04128570f1d58476f311b4 *CITATION
a07ec12abb7688ef0a0b1ac7ef6a944a *DESCRIPTION
5544753131d9ee908f786a1b456e0526 *INDEX
8791b2189d2ddf930a93f98cdabc3b50 *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c9dd09f02f08c2e96d510838efa8d656 *Meta/hsearch.rds
5df3365c90dea942805e858ec4e217a0 *Meta/links.rds
a6542a6ffe596cfaa27d755b1f2ae1ee *Meta/nsInfo.rds
230a23140cf49fc69063385d994f5daf *Meta/package.rds
e21cab5493800c855c92c68bb71b87a4 *Meta/vignette.rds
8b13203d21b38f8e40b82a56146221c3 *NAMESPACE
d6424224e3e1862c55673b0861c40aef *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/motifcounter
944e26d2c85dfc73aadb3ea7d791930b *R/motifcounter.rdb
5200677f3d1681a8027cf8c537d73de8 *R/motifcounter.rdx
8d19a5d7e38a6ebf1d7ef41ae23963a5 *doc/index.html
c26c605c38ac1bc344fb224bba12ad6d *doc/motifcounter.R
4522999932c71a38ebe74b53da6cb32a *doc/motifcounter.Rmd
8a4b44e2e57b092723e9e5aeb0cc196e *doc/motifcounter.html
50df954ee79d0f5a78eb73d8bc322d4c *extdata/m1.tab
6441842ee60b856a7dbd3e8269175572 *extdata/m12.tab
ab7fc1464e844415056df107769f4b64 *extdata/m2.tab
072c2db184ea9dd62de9a67c747edc44 *extdata/oct4_chipseq.fa
5b38fa6389b08d3a65f21294be7aee07 *extdata/seq.fasta
f142bb690529139fed13c75e0ecbaac4 *extdata/seq1.fasta
9cc226e7e9a2a7797dff257bc31ac5a1 *extdata/seq2.fasta
3b458d2042a7ab6a93442abe29c9edbc *extdata/test.fa
d309d44d1afb8021344ff0e4aeca342a *extdata/test.tab
41a01add41f4e45303e61b6366f07eb9 *extdata/test2.fa
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0f7fd6131c16f42826fba4895e26b53f *extdata/x21.tab
0cf2f5d8c38b3d48158a42af0589b46c *extdata/x3.tab
85418671c5dc1dc29156d8bed9f1dc85 *extdata/x31.tab
0d596bc3216241c2ef0ac9f67d859305 *extdata/x32.tab
a63c9d9bde5e7d71d5e533284ae38d28 *extdata/x8.tab
3be84dbaba38c8f4b0b0ff4c395e430d *help/AnIndex
a6ccf030fcb7d468ff273e9754f01459 *help/aliases.rds
53a756118df87cc18d4d07249dc92ffe *help/motifcounter.rdb
d85f502dea546272b195bcfb12c9caf5 *help/motifcounter.rdx
49fee82621383daf2f68f875928bcbdc *help/paths.rds
37c73722765567f92fdb5e51a65f5054 *html/00Index.html
c52c6990ce4f6559d2d5155b578bef92 *html/Background-class.html
1762e3fb892a8270f997d7eabcc29476 *html/Overlap-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1d7c6dbe08d42982a94c851b954632f1 *html/clumpSizeDist.html
adfc2ca1bac781c5d5bb165f22233540 *html/combinatorialDist.html
4ea030e8ebec6ad095bef073c694e4ea *html/compoundPoissonDist.html
1794ac8b5348973e6e01f072e97ab80c *html/computeClumpStartProb.html
64e7f5cc7686362368d38f09354be91c *html/generateDNAString.html
e335666be3ccaaf26975f8f8dd5d8cb4 *html/generateDNAStringSet.html
0f649fead95b93f6b10e49a32fe7f81f *html/getAlpha.html
87fc6a76f5e423c4f8850219e4db2224 *html/getBeta.html
9845cac44fa2b99005105ca1e9de68bc *html/getBeta3p.html
2baf3bd519eb898b0d20ec4130acb04d *html/getBeta5p.html
b913ef538fd0130a4690387341097b5c *html/getCounts.html
63947294fa5c057010ba37faa41a83a0 *html/getGamma.html
7d33e3a23d3dd928dcbf421d5b6b54a5 *html/getOrder.html
9f3f0f4a3d17bc9a072e41f946ec1d84 *html/getSinglestranded.html
c46aaee2abb7cef4afb59c2ce71e0017 *html/getStation.html
820ca2ab5bbba99d513cfbd7d2fb56b1 *html/getTrans.html
001f0dc324957ff8b08a7a36f41f0fab *html/hitStrand.html
1cb9225975c3b6c463c74be1b6598d4e *html/lenSequences.html
b301efd13c5b630aed96e24ae2e6f7c6 *html/markovModel.html
f3103109bb8b624a3d6a69522150c453 *html/motifAndBackgroundValid.html
b1fe43e461816dcbf00755a659aec8c5 *html/motifEnrichment.html
4e2573b6d1e34546d1beda476837edb7 *html/motifHitProfile.html
2fc44c2a6ed3a1ad8dc2d6a7fc098c27 *html/motifHits.html
e5e3aa28e5342f00117b1a1636398e26 *html/motifValid.html
ee055e0a85a206f544f316c58e7375b7 *html/motifcounter-package.html
c06532f192e1db56a642a690ab838519 *html/motifcounterOptions.html
e0f437c6580e259395c29506193d02eb *html/normalizeMotif.html
7580320166ea4443e2d4486be00024d6 *html/numMotifHits.html
a249805a411d3d659b212897d228b39c *html/probOverlapHit.html
0b2895ce927b7f37f89a7e5f01a8798f *html/readBackground.html
70f48a76b05f03bafa62adbd9e1d0eb8 *html/revcompMotif.html
0697c91cf5c3cc58594a4cc082cd06f3 *html/scoreDist.html
305ec7becabe48155fdb4d823a2e7b2d *html/scoreDistBf.html
6062f11d57526d3f16fa02e49b172d09 *html/scoreDistEmpirical.html
030e23baa38e3c5b9bc2fff1daeb49ac *html/scoreHistogram.html
0bd7cf3d95192415219fea7e56fdf4b4 *html/scoreHistogramSingleSeq.html
b166b2f7ad69214415f745f25c9cf202 *html/scoreProfile.html
e96ea984404bfbecfe3d2f18aad8ea31 *html/scoreSequence.html
30f425140b9019e07973bfa080171c1f *html/scoreStrand.html
8c42d0ac56d85fc1553864f56fa11944 *html/scoreThreshold.html
98571a116e95d5cf01a96947a4ee78d6 *html/sigLevel.html
6788f4b580b0687750b67682ef90eeef *html/simulateClumpSizeDist.html
fcf37bfd2d96abb11e1ce1817ee1edc6 *html/simulateNumHitsDist.html
eabb0318ba563d23666428213055a1c6 *libs/i386/motifcounter.dll
f01c9ef65094f6de99dfce7bbee568b6 *libs/x64/motifcounter.dll
