calibrate_per_cell_total_proposal {monocle} | R Documentation

## Calibrate_per_cell_total_proposal

### Description

Calibrate_per_cell_total_proposal

### Usage

    calibrate_per_cell_total_proposal(relative_exprs_matrix, t_estimate,
      expected_capture_rate, method = c("num_genes", "tpm_fraction"))

### Arguments

`relative_exprs_matrix` | The matrix of relative TPM expression values
`t_estimate` | the TPM value that corresponds to 1 cDNA copy per cell
`expected_capture_rate` | The fraction of mRNAs captured as cDNAs
`method` | the formula to estimate the total mRNAs (num_genes corresponds to the second formula while tpm_fraction corresponds to the first formula, see the anouncement on Trapnell lab website for the Census paper)

[Package monocle version 2.15.0 Index]