plot_coexpression_matrix {monocle} | R Documentation

## Not sure we're ready to release this one quite yet: Plot the branch genes in pseduotime with separate branch curves

### Description

Not sure we're ready to release this one quite yet: Plot the branch genes in pseduotime with separate branch curves

### Usage

    plot_coexpression_matrix(cds, rowgenes, colgenes, relative_expr = TRUE,
      min_expr = NULL, cell_size = 0.85, label_by_short_name = TRUE,
      show_density = TRUE, round_expr = FALSE)

### Arguments

`cds` | CellDataSet for the experiment
`rowgenes` | Gene ids or short names to be arrayed on the vertical axis.
`colgenes` | Gene ids or short names to be arrayed on the horizontal axis
`relative_expr` | Whether to transform expression into relative values
`min_expr` | The minimum level of expression to show in the plot
`cell_size` | A number how large the cells should be in the plot
`label_by_short_name` | a boolean that indicates whether cells should be labeled by their short name
`show_density` | a boolean that indicates whether a 2D density estimation should be shown in the plot
`round_expr` | a boolean that indicates whether cds_expr values should be rounded or not

### Value

a ggplot2 plot object

[Package monocle version 2.15.0 Index]