prepMsigDB {mogsa} | R Documentation

## Conver gmt format file to a list

### Description

Convert a gmt file (Could be downloaded from MSigDB) to a list of gene sets information.

### Usage

    	prepMsigDB(file)

### Arguments

`file` | The directory and file name of the gmt file.

### Value

This function returns an object of list containing gene set information, which could be further processed by function "prepSupMoa" to convert to the object that can be used as input of "sup.moa" or "mogsa".

### Author(s)

Chen Meng

### See Also

See Also as `prepGraphite` and `prepSupMoa`.

### Examples

    	# not run
    	dir <- system.file(package = "mogsa")
    	preGS <- prepMsigDB(file=paste(dir,
    		"/extdata/example_msigdb_data.gmt.gz", sep = ""))

[Package mogsa version 1.21.0 Index]