getMiRNASequence {miRBaseConverter} | R Documentation

## Get the miRNA sequences

### Description

This function returns the miRNA sequences for a list of miRNAs.

### Usage

    getMiRNASequence(Accessions, targetVersion = "v22")

### Arguments

`Accessions` | A character vector representing the miRNA Accessions in miRBase.
`targetVersion` | A character value representing the target miRBase version corresponding the Accessions. Users can apply the function getAllVersionInfo() to get the available miRNA version names. The optional values are in below: "v6","v7_1","v8","v8_1","v8_2","v9","v9_1","v9_2","v10","v10_1","v11","v12","v13","v14", "v15","v16","v17","v18","v19","v20","v21","v22"

### Value

A nx2 data frame. The number of row equals to input miRNAs. The two columns are defined as below:

- Accession : The original miRNA (Column 1).

- miRNASequence_{targetVersion} : The return miRNA sequence (in specified version) corresponding to the input miRNAs (Column 2).

### Author(s)

Xu, Taosheng taosheng.x@gmail.com

### Examples

    #####1, The input are miRNA Accessions
    data(miRNATest)
    Accessions=miRNATest$Accession
    result1=getMiRNASequence(Accessions,targetVersion="v13")
    result2=getMiRNASequence(Accessions,targetVersion="v22")

    #####2, The input are miRNA Names
    data(miRNATest)
    miRNANames=miRNATest$miRNA_Name
    result3=miRNAVersionConvert(miRNANames,targetVersion="v22",exact=TRUE)
    Accessions=result3$Accession
    result4=getMiRNASequence(Accessions,targetVersion="v22")

[Package miRBaseConverter version 1.11.0 Index]