samplesForTransgenerationalAnalysis {methylInheritance} | R Documentation

## All samples information, formated by `methylKit`, in a `methylRawList` format (for demo purpose).

### Description

The object is a `list` with 3 entries. Each entry corresponds to the information for one generation (first entry = first generation, etc..) stored in a `methylRawList`. There are 12 samples (6 controls and 6 cases) for each generation. Each sample information is stored in a `methylRaw` object.

### Usage

    data(samplesForTransgenerationalAnalysis)

### Format

A `list` containing three `methylRawList` objects. Each `methylRawList` contains the information for one generation (first entry = first generation, etc..). Each sample information is stored in a `methylRaw` object. There is `methylRaw` objects (6 controls and 6 cases) in each generation.

### Details

This dataset can be used to test the `runPermutation` function.

### Value

A `list` containing three `methylRawList` objects. Each `methylRawList` contains the information for one generation (first entry = first generation, etc..). Each sample information is stored in a `methylRaw` object. There is `methylRaw` objects (6 controls and 6 cases) in each generation.

### See Also

- `runPermutation` for running a permutation analysis, and optionally an observation analysis, using multi-generational dataset

### Examples

    ## Loading dataset
    data(samplesForTransgenerationalAnalysis)

    ## Run a permutation analysis
    runPermutation(methylKitData = samplesForTransgenerationalAnalysis,
        type = "tiles", nbrPermutations = 2, vSeed = 2332)

[Package methylInheritance version 1.11.0 Index]