importRene {methimpute} | R Documentation

## Import a Rene methylation extractor file

### Description

Import a Rene methylation extractor file into a `GRanges-class` object.

### Usage

    importRene(file, chrom.lengths = NULL, skip = 1)

### Arguments

`file` | The file to import.
`chrom.lengths` | A data.frame with chromosome names in the first, and chromosome lengths in the second column. Only chromosomes named in here will be returned. Alternatively a tab-separated file with such a data.frame (with headers).
`skip` | The number of lines to skip. Usually 1 if the file contains a header and 0 otherwise.

### Value

A `methimputeData` object.

### Examples

    ## Get an example file in Rene format
    file <- system.file("extdata","arabidopsis_rene.txt", package="methimpute")
    data(arabidopsis_chromosomes)
    rene.data <- methimpute:::importRene(file, chrom.lengths=arabidopsis_chromosomes)

[Package methimpute version 1.9.0 Index]