show.BioVector {kebabs} | R Documentation

## Display Various KeBABS Objects

### Description

Display methods for BioVector, SpectrumKernel, MismatchKernel, GappyPairKernel, MotifKernel, SymmetricPairKernel, ExplicitRepresentationDense, ExplicitRepresentationSparse, PredictionProfile, CrossValidationResult, ModelSelectionResult, SVMInformation and KBModel objects

### Usage

    show.BioVector(object)

    ## S4 method for signature 'PredictionProfile'
    show(object)

    ## S4 method for signature 'SpectrumKernel'
    show(object)

    ## S4 method for signature 'MismatchKernel'
    show(object)

    ## S4 method for signature 'MotifKernel'
    show(object)

    ## S4 method for signature 'GappyPairKernel'
    show(object)

    ## S4 method for signature 'SymmetricPairKernel'
    show(object)

    ## S4 method for signature 'ExplicitRepresentationDense'
    show(object)

    ## S4 method for signature 'ExplicitRepresentationSparse'
    show(object)

    ## S4 method for signature 'CrossValidationResult'
    show(object)

    ## S4 method for signature 'ModelSelectionResult'
    show(object)

    ## S4 method for signature 'SVMInformation'
    show(object)

    ## S4 method for signature 'KBModel'
    show(object)

    ## S4 method for signature 'ROCData'
    show(object)

### Arguments

`object` | object of class BioVector, PredictionProfile, SpectrumKernel, MismatchKernel, GappyPairKernel, MotifKernel, SymmetricPairKernel, ExplicitRepresentation, ExplicitRepresentationSparse, PredictionProfile, CrossValidationResult, ModelSelectionResult, SVMInformation or KBModel to be displayed

### Details

`show` displays on overview of the selected object.

### Value

`show`: show returns an invisible `NULL`

### Author(s)

Johannes Palme <kebabs@bioinf.jku.at>

### References

http://www.bioinf.jku.at/software/kebabs
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

### Examples

    ## load coiled coil data
    data(CCoil)

    ## show amino acid sequences
    ccseq

    ## define spectrum kernel object
    specK1 <- spectrumKernel(k=1, normalized=FALSE)

    ## show kernel object
    show(specK1)

    ## compute explicit representation for the first 5 sequences
    ## in dense format
    er <- getExRep(ccseq, specK1, sel=1:5, sparse=FALSE)

    ## show dense explicit representation
    show(er)

[Package kebabs version 1.21.0 Index]