46b5ced3517b929ab2fe4cae253054ed *CITATION
800e7bfd60b587f594ae1950b200bb7b *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
99069e8da4d4365b44e79fcec14bdfbf *Meta/Rd.rds
6a93732733d04d45f334d2b9654b9895 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
04e7925e57de3fb87eecf7637c911fb2 *Meta/hsearch.rds
dfa2088f2c032c5445aab69e8a889668 *Meta/links.rds
121ae856232d0bd95b4974ab2dbe9f22 *Meta/nsInfo.rds
8478afdece2516b84f6f7b690ac16fa1 *Meta/package.rds
9377b9a5b2785a4f707ce6dbf5ef999e *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
9255321159f8df0508cc89d2ffa2e985 *R/isobar.rdb
3680668ef33ee44444eb4989f27291d5 *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
8f5728f794db3cb5dc8cc97f0267f43b *doc/isobar-devel.pdf
9cdd609cdff0eb483b3c4be30ddc9df0 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
7ce89d31ab7e1836712c8ee280aedeb8 *doc/isobar-ptm.pdf
8edfd6d1d02b284425d25dda029a92cc *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
3173473df1b87f7c1b0ad3f34efef27c *doc/isobar-usecases.pdf
27e389d69560bc70be4f67850e716580 *doc/isobar.R
0286bb554d231774371cc1860a6f9e6a *doc/isobar.Rnw
78c2f292b84c401126e2e19658e1fcbc *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
4b112101e0d1db37dcf59dc3de20674a *help/aliases.rds
1c9020457e16e6ecde4507356f3bea1c *help/isobar.rdb
aeea33ea0c7ff1fa3365dc58cedcdf52 *help/isobar.rdx
2c46f817e47c87b988a4ac8eb24a2dab *help/paths.rds
89253b3a0bbe6220840e50d5b620f6f5 *html/00Index.html
6a4ae248746229708c7949179b9f75c4 *html/IBSpectra-class.html
b4454d56f17b27beaa4f12bf3fd597ce *html/NoiseModel-class.html
3ba4c2cdd5a22eed197966a1039d3306 *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
ee56be6107e99a74a62a68266aa39101 *html/TlsParameter-class.html
4a5e6e9d391197c319b2087ec9b49870 *html/Tlsd-class.html
9c80d926f20cde032ad0a727a2a20027 *html/calc.delta.score.html
5a939cd94ca7c9bfdc5a9a0ca6d8cdb5 *html/calc.startpos.html
b3173f81922df523baec55608e077b88 *html/calculate-pvalues.html
127fd5998618674e49bec7f5a02edd54 *html/calculate.dNSAF.html
6cdbc501e4e51992ffaf3fe9e980867c *html/calculate.emPAI.html
6b688710ee4f6524eddadc36bc974e3a *html/correct.peptide.ratios.html
01f177c70d3f70822edc29d22b5c4a05 *html/distr-methods.html
06f4237e9fa30db36c28e4a1fb8fe8eb *html/fit-distr.html
ad539ffda1a7b68b12879fc88743eb9c *html/getPeptideModifContext.html
db8e5b7beddf56be8f5f705ca3a04e2b *html/getPhosphoRSProbabilities.html
dfe3af44cf7a1a0bfbe511f850dcc9e6 *html/getPtmInfo.html
ef8bea33a8699b4596416f59d3bb0213 *html/groupMemberPeptides.html
4e3aa9132bbb8edc6f1ac2b317818f1a *html/human.protein.names.html
4564ccad47d91e7f1745d1377803e2ff *html/isobar-analysis.html
5d3341d638a9140f5b2743037af36bf9 *html/isobar-data.html
3ec21bd291e5baeaf713bc4ac603d88f *html/isobar-import.html
ae2440ba1493ef50b7e3cf69d431b08e *html/isobar-log.html
f9428a275d06898def19903ed2edee99 *html/isobar-package.html
9c4b5e512cb58dc67cc9c1e4aa7cebcd *html/isobar-plots.html
9c8036472a0eaad8ececb5fc77f23a58 *html/isobar-preprocessing.html
7265237a722c5468520dc455872926d2 *html/isobar-reports.html
dcb379128e6429bce12750e2a511e727 *html/maplot.protein.html
6620e6ef1256566c830ad4f15ca42f0b *html/number.ranges.html
f7cd797e2ad17767ab287cc2cf9a1bf4 *html/observedKnownSites.html
520619cc2fe422e7e266d54fa07a0000 *html/peptide.count.html
fcef35614cb989f3e6a3b9f698059f72 *html/proteinInfo-methods.html
521fea2d0795efe2cc366e93174c1a1a *html/proteinNameAndDescription.html
a28cf6a88bab4ae0d0c888083b4c0565 *html/ratio-summ.html
7193b1ebf3ff8de82aeb21c48ecc9ba1 *html/ratiosReshapeWide.html
b28993d155b14f2fec094fb21d4e176f *html/reporter.protein-methods.html
2312a4b9a3a34cd477f0e05d4f65b531 *html/sanitize.html
9d9a46cb71aef54659ca80ad6efcceb8 *html/shared.ratios.html
844afa511bf68b0ac5362f0b9c610411 *html/shared.ratios.sign.html
a7e7bc3ca56b6a495ae7390080929173 *html/specificities.html
21f9394666fd78b0fdac63856d9db36b *html/spectra.count2.html
3b3a2f9cbf9d24c5939c9b8385fb0de5 *html/subsetIBSpectra.html
c538662fe6be02694addcb8d6538de2b *html/utils.html
ce862e09734e0a14f61ea6b849289aaf *html/writeHscoreData.html
1926e6dce98a35514477a94dbff17395 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
