deseqresult2DEgenes {ideal} | R Documentation

## Generate a tidy table with the DE genes from the results of DESeq

### Description

Generate a tidy table with the DE genes from the results of DESeq

### Usage

    deseqresult2DEgenes(deseqresult, FDR = 0.05)

### Arguments

`deseqresult` | A `DESeqResults` object
`FDR` | Numeric value, the significance level for thresholding adjusted p-values

### Value

A "tidy" data.frame with only genes marked as differentially expressed

### Examples

    # with simulated data...
    library(DESeq2)
    dds <- DESeq2::makeExampleDESeqDataSet(n=100, m=8, betaSD = 2)
    dds <- DESeq(dds)
    res <- results(dds)
    deseqresult2DEgenes(res)

[Package ideal version 1.11.2 Index]