msigdb_download_all {hypeR} | R Documentation

## Download all gsets from msigdb for a species

### Description

Download all gsets from msigdb for a species

### Usage

    msigdb_download_all(species = "Homo sapiens", output_dir = NULL)

### Arguments

`species` | A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)
`output_dir` | A directory path where gene sets are downloaded instead of to the package location

### Value

A list containing the output directory and version number of gene sets

### Examples

    msigdb_path <- msigdb_download_all("Homo sapiens")

[Package hypeR version 1.3.0 Index]