.enrichment_map {hypeR} | R Documentation

## Plot enrichment map

### Description

Plot enrichment map

### Usage

    .enrichment_map(hyp_df, gsets, title,
      similarity_metric = c("jaccard_similarity", "overlap_similarity"),
      similarity_cutoff = 0.2, pval_cutoff = 1, fdr_cutoff = 1,
      val = c("fdr", "pval"), top = NULL)

### Arguments

`hyp_df` | A dataframe from a hyp object
`gsets` | A list of genesets
`title` | Plot title
`similarity_metric` | Metric to calculate geneset similarity
`similarity_cutoff` | Geneset similarity cutoff
`pval_cutoff` | Filter results to be less than pval cutoff
`fdr_cutoff` | Filter results to be less than fdr cutoff
`val` | Choose significance value shown above nodes e.g. c("fdr", "pval")
`top` | Limit number of pathways shown

### Value

A visNetwork object

[Package hypeR version 1.3.0 Index]