hyp_to_table {hypeR} | R Documentation

## Export hyp/multihyp object to table

### Description

Export hyp/multihyp object to table

### Usage

    hyp_to_table(hyp_obj, file_path, sep = "\t", cols = NULL)

### Arguments

`hyp_obj` | A hyp or multihyp object
`file_path` | Output file path
`sep` | The field separator string
`cols` | Dataframe columns to include

### Value

None

### Examples

    gsets <- hyperdb_fetch(type="gsets", "KEGG_2019_Human")

    signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
                   "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
                   "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")

    # Perform hyper enrichment
    hyp_obj <- hypeR(signature, gsets, bg=2522, fdr_cutoff=0.05)

    # Export
    hyp_to_table(hyp_obj, file_path="pathways.txt")

[Package hypeR version 1.3.0 Index]