msigdb_fetch {hypeR} | R Documentation

## Fetch gsets from msigdb

### Description

Fetch gsets from msigdb

### Usage

    msigdb_fetch(msigdb_path, symbol = c("C1", "C2.CGP", "C2.CP",
      "C2.CP.BIOCARTA", "C2.CP.KEGG", "C2.CP.REACTOME", "C3.MIR", "C3.TFT",
      "C4.CGN", "C4.CM", "C5.BP", "C5.CC", "C5.MF", "C6", "C7", "H"))

### Arguments

`msigdb_path` | A list containing the gene set directory and version number of gene sets
`symbol` | A symbol corresponding to a msigdb gene set

### Value

A list of gene sets

### Examples

    msigdb_path <- msigdb_download_all("Homo sapiens")
    REACTOME <- msigdb_fetch(msigdb_path, "C2.CP.REACTOME")

[Package hypeR version 1.3.0 Index]