# Gaussian Process Ranking and Estimation of Gene Expression time-series

## Documentation for package ‘gprege’ version 1.31.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

gprege-package | gprege - Gaussian Process Ranking and Estimation of Gene Expression.
compareROC | Make ROC plots.
demTp63Gp1 | gprege on TP63 expression time-series.
DGatta_labels_byTSNI | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
DGatta_labels_byTSNItop100 | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
DGdat_p63_case1_GL | BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
DGdat_p63_case2_GL | BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
DGdat_p63_case3_GL | BATS rankings (Angelini, 2007) Case 1: Delta error prior Case 2: Inverse Gamma error prior Case 3: Double Exponential error prior
exhaustivePlot | Plot of the LML function by exhaustive search.
exprs_tp63_RMA | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
FragmentDellaGattaData | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
genesymbols | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
gprege | Gaussian process ranking and estimation of gene expression time-series
gpregeOutput | Fragment dataset of 13 time-point mouse microarray time series of gene expression ratios and and a ranking list of TP63 targets suggested by TSNI.
rocStats | Make ROC curve data.