[,GenoSet,ANY,ANY,ANY-method {genoset} | R Documentation

## Subset a GenoSet

### Description

Subset a GenoSet

### Usage

    ## S4 method for signature 'GenoSet,ANY,ANY,ANY'
    x[i, j, k, ..., withDimnames = TRUE,
      drop = FALSE]

    ## S4 replacement method for signature 'GenoSet,ANY,ANY,ANY'
    x[i, j, k] <- value

### Arguments

`x` | GenoSet
`i` | character, GRanges, logical, integer
`j` | character, logical, integer
`k` | character or integer
`...` | additional subsetting args
`withDimnames` | scalar logical, put dimnames on returned assay?
`drop` | logical drop levels of space factor?
`value` | incoming data for assay 'k', rows 'i' and cols 'j'

### Examples

      data(genoset,package='genoset')
      genoset.ds[1:5,2:3]  # first five probes and samples 2 and 3
      genoset.ds[ , 'K']  # Sample called K
      gr = GRanges(ranges=IRanges(start=seq(from=15e6,by=1e6,length=7),width=1,names=letters[8:14]),seqnames=rep('chr17',7))
      genoset.ds[ gr, 'K' ]  # sample K and probes overlapping those in rd, which overlap specifed ranges on chr17

[Package genoset version 1.43.0 Index]