isGenomeOrder {genoset} | R Documentation

## Check if a GRanges orGenoSet is in genome order

### Description

Checks that rows in each chr are ordered by start. If strict=TRUE, then chromosomes must be in order specified by chrOrder. isGenomeOrder for GRanges differs from order in that it orders by chromsome and start position only, rather than chromsome, strand, start, and width.

### Usage

    isGenomeOrder(ds, strict = TRUE)

### Arguments

`ds` | GenoSet or GRanges
`strict` | logical, should space/chromosome order be identical to that from chrOrder?

### Value

logical

### See Also

Other 'genome ordering': `chrOrder`, `toGenomeOrder`

### Examples

      data(genoset,package='genoset')
      isGenomeOrder( rowRanges(genoset.ds) )

[Package genoset version 1.43.0 Index]