mappedReads {epigenomix} | R Documentation

## Mapped reads obtained from a anti-histone ChIP-seq experiment.

### Description

The `GRangesList` contains two elements: "CEBPA_WT_1" and "CEBPA_KO_1". Both list elements are `GRanges` objects storing mapped reads from anti-H3K4me3 ChIP-seq experiments. The first sample was a wild-type mouse cell line. The second sample was obtained from the same cell line after CEPBA knock-out.

### Usage

    data(mappedReads)

### Format

A `GRangesList` with two `GRanges`.

### Details

Duplicated reads and reads mapping to more than one genomic location were removed. Reads were extended to the estimated DNA fragment size of 200bp towards the 3 prime end. Further, only reads lying within certain regions of chromomse 1 were kept to reduce storage space.

### Examples

    data(mappedReads)
    names(mappedReads)
    mappedReads[[1]]

[Package epigenomix version 1.27.1 Index]