Package: ddCt
Title: The ddCt Algorithm for the Analysis of Quantitative Real-Time
        PCR (qRT-PCR)
Version: 1.43.0
Date: 2017-06-07
Author: Jitao David Zhang, Rudolf Biczok, and Markus Ruschhaupt
Description: The Delta-Delta-Ct (ddCt) Algorithm is an approximation method to determine relative gene expression with quantitative real-time PCR (qRT-PCR) experiments. Compared to other approaches, it requires no standard curve for each primer-target pair, therefore reducing the working load and yet returning accurate enough results as long as the assumptions of the amplification efficiency hold. The ddCt package implements a pipeline to collect, analyse and visualize qRT-PCR results, for example those from TaqMan SDM software, mainly using the ddCt method. The pipeline can be either invoked by a script in command-line or through the API consisting of S4-Classes, methods and functions. 
Maintainer: Jitao David Zhang <jitao_david.zhang@roche.com>
biocViews: GeneExpression, DifferentialExpression,
        MicrotitrePlateAssay, qPCR
License: LGPL-3
Depends: R (>= 2.3.0), methods
Imports: Biobase (>= 1.10.0), RColorBrewer (>= 0.1-3), xtable, lattice,
        BiocGenerics
Collate: AllGlobals.R AllClasses.R AllGenerics.R AllFunctions.R
        AllMethods.R absoluteQ.R ddCtSplit.R output.R visualization.R
Suggests: RUnit
git_url: https://git.bioconductor.org/packages/ddCt
git_branch: master
git_last_commit: e26b717
git_last_commit_date: 2019-10-29
Date/Publication: 2019-11-06
NeedsCompilation: no
Packaged: 2019-11-07 03:24:02 UTC; biocbuild
Built: R 4.0.0; ; 2019-11-07 07:28:28 UTC; windows
