ecoli.proteome {dagLogo} | R Documentation

## An object of `Proteome-class` representing the Escherichia coli proteome.

### Description

A dataset containing the E. coli proteome.

### Usage

    ecoli.proteome

### Format

An object of `Proteome-class` for Escherichia coli proteome. The format is: A list with one data frame and an character.

*‘proteome': ’data.frame': 13780 obs. of 4 variables *‘type': ’character': "UniProt" *‘species': ’character': "Escherichia coli"

The format of proteome is *'ENTREZ_GENE': a character vector, records entrez gene id *'SEQUENCE': a character vector, peptide sequences *'ID': a character vector, Uniprot ID *'LEN': a character vector, length of peptides

### Details

used as an example dataset

Annotation data obtained by:

library(UniProt.ws)

taxId(UniProt.ws) <- 562

proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")

### Source

http://www.uniprot.org/

### Examples

     data(ecoli.proteome)
     head(ecoli.proteome@proteome)
     ecoli.proteome@type

[Package dagLogo version 1.25.0 Index]