csBoxplot {cummeRbund} | R Documentation

## csBoxplot

### Description

Creates a ggplot2 plot object with a geom_box layer displaying summary statistics for FPKM values across samples (x).

### Usage

    ## S4 method for signature 'CuffData'
    csBoxplot(object, logMode=TRUE, pseudocount=0.0001, replicates=FALSE,...)

### Arguments

`object` | An object of class CuffData.
`logMode` | A logical argument to log10 -transform FPKM values.
`pseudocount` | Value added to FPKM to avoid log-transform issues.
`replicates` | A logical value whether or not to plot individual replicates or aggregate condition values.
`...` | Additional arguments to csBoxplot

### Details

None

### Value

A ggplot2 plot object with a geom_box layer.

### Note

None

### Author(s)

Loyal A. Goff

### References

None

### Examples

    	a<-readCufflinks(system.file("extdata", package="cummeRbund")) #Read cufflinks data and create CuffSet object
    	genes<-a@genes #CuffData object for all genes
    	csBoxplot(genes)

[Package cummeRbund version 2.29.0 Index]