makeCellTree {ctgGEM} | R Documentation

## A Cell Tree Generating Function using cellTree

### Description

This function, called by `generate_tree`, creates a cell tree using the data and the cellTree package. This function utilizes code from the cellTree vignette R script.

### Usage

    makeCellTree(dataSet, outputDir = NULL)

### Arguments

`dataSet` | a ctgGEMset object
`outputDir` | the directory where output should be saved, defaults to the temporary location returned by `tempdir()`

### Value

an updated ctgGEMset object

[Package ctgGEM version 0.99.3 Index]