VEGASResult-class {cpvSNP} | R Documentation

## Class `"VEGASResult"`

### Description

Objects of this class store results from running VEGAS.

### Objects from the Class

Objects can be created by calls of `vegas`.

### Slots

`geneSetName`:

  Object of class `"character"`, the name of the geneSet

`pValue`:

  Object of class `"numeric"`, the p-value

`degreesOfFreedom`:

  Object of class `"integer"`, the degrees of freedom used to calculate the p-value

`statistic`:

  Object of class `"numeric"`, the test statistic for the set

`simulatedStats`:

  Object of class `"vector"`, the simulated statistics for the set used to calculate the p-value

### Methods

No methods defined with class "VEGASResult" in the signature.

### Accessors

In the code snippets below, `object` is a VEGASResult object.

`geneSetName(object)`:

  The name of the gene set.

`pValue(object)`:

  A numeric p-value.

`degreesOfFreedom(object)`:

  Integer value of the degrees of freedom used in the statistical test.

`statistic(object)`:

  A numeric value corresponding to the statistic calculated from the test performed.

### Author(s)

Caitlin McHugh

### See Also

`VEGASResultCollection`, `GLOSSIResult`

### Examples

    showClass("VEGASResult")

[Package cpvSNP version 1.19.0 Index]