orderContigsGreedy {contiBAIT} | R Documentation

## Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within

### Description

Function to order contigs within a single linkage group using a greedy algorithms Attempt to order contigs within

### Usage

    orderContigsGreedy(linkageGroupReadTable, randomAttempts = 75,
      nProcesses = 1, verbose = TRUE)

### Arguments

`linkageGroupReadTable` | dataframe of strand calls (product of combineZeroDists or preprocessStrandTable)
`randomAttempts` | number of times to repeat the greedy algortihm with a random restart
`nProcesses` | number of processes to attempt ordering in parallel
`verbose` | whether to print verbose messages

### Value

list of two members: 1) contig names in order, 2) the original data.frame entered into function correctly ordered

[Package contiBAIT version 1.15.0 Index]