get.bentink.subtypes {consensusOV} | R Documentation

## Get ovarian cancer subtypes as defined by Bentink et al., 2012

### Description

Get ovarian cancer subtypes as defined by Bentink et al., 2012

### Usage

    get.bentink.subtypes(expression.matrix, entrez.ids)

### Arguments

`expression.matrix` | A matrix of gene expression values with rows as genes, columns as samples.
`entrez.ids` | A vector of Entrez Gene IDs, corresponding to the rows of `expression.matrix`

### Value

A list with first value `Bentink.subtypes` containing a factor of subtype names; and second value `angio` containing the ouput of `genefu::ovcAngiogenic`

### References

Bentink et al. Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer. PloS one (2012).

### Examples

    library(Biobase)
    library(genefu)
    data(GSE14764.eset)
    expression.matrix <- exprs(GSE14764.eset)
    entrez.ids <- as.character(fData(GSE14764.eset)$EntrezGene.ID)
    get.bentink.subtypes(expression.matrix, entrez.ids)

[Package consensusOV version 1.9.1 Index]