find.pairs {cobindR} | R Documentation

## function to find pairs of binding sites for every sequence in a given object of class "cobindr"

### Description

find.pairs creates a data frame with all pairs in all sequences within the given distance.

### Usage

    find.pairs(x, background_scan = FALSE, n.cpu = NA)

### Arguments

`x` | an object of the class "cobindr", which will hold all necessary information about the sequences and the hits.
`background_scan` | logical flag, if background_scan = TRUE the pairs for the background sequences will be found.
`n.cpu` | number of CPUs to be used for parallelization. Default value is 'NA' in which case the number of available CPUs is checked and than used.

### Value

`runObj` | an object of the class "cobindr" including the pairs of transcription factor binding sites

### Author(s)

Yue-Hien Lee <>

### See Also

`plot.detrending`

[Package cobindR version 1.25.0 Index]