plotDeviationsTsne {chromVAR} | R Documentation

## plotDeviationsTsne

### Description

plots sample similarity tsne

### Usage

    plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
      annotation_name = NULL, shiny = interactive())

### Arguments

`object` | deviations result object
`tsne` | result from `deviationsTsne`
`var_df` | variability result
`sample_column` | column name for sample data – colData(object) – to be used for coloring points
`annotation_name` | name of chromVAR annotation for coloring points
`shiny` | return shiny app? otherwise return static plots

### Value

shiny app or plots

### Author(s)

Alicia Schep

[Package chromVAR version 1.9.0 Index]