annotationMatches {chromVAR} | R Documentation

## annotationMatches

### Description

annotationMatches

### Usage

    annotationMatches(object)

    annotationMatches(object) <- value

    ## S4 method for signature 'SummarizedExperiment'
    annotationMatches(object)

    ## S4 replacement method for signature 'SummarizedExperiment'
    annotationMatches(object) <- value

### Arguments

`object` | SummarizedExperiment with matches slot, see details
`value` | logical Matrix with annotation matches

### Details

Will extract matrix from the "matches", "annotationMatches", or "motif_matches" assay of a SummarizedExperiment

### Value

logical matrix of annotation matches

### Author(s)

Alicia Schep

### Examples

    # load annotation matrix; result from matchMotifs
    data(mini_ix, package = "chromVAR")
    matches <- annotationMatches(mini_ix)

[Package chromVAR version 1.9.0 Index]