import_squid {chimeraviz} | R Documentation

## Import results from a SQUID run into a list of Fusion objects.

### Description

A function that imports the results from a SQUID run into a list of Fusion objects.

### Usage

    import_squid(filename, genome_version, limit)

### Arguments

`filename` | Filename for the SQUID results.
`genome_version` | Which genome was used in mapping (hg19, hg38, etc.).
`limit` | A limit on how many lines to read.

### Value

A list of Fusion objects.

### Examples

    squidfile <- system.file(
      "extdata",
      "squid_hcc1954_sv.txt",
      package="chimeraviz")
    fusions <- import_squid(squidfile, "hg19", 3)
    # This should import a list of 3 fusions described in Fusion objects.

[Package chimeraviz version 1.13.8 Index]