plot_pca {cellity} | R Documentation

## Plots PCA of all features. Colors high and low quality cells based on outlier detection.

### Description

Plots PCA of all features. Colors high and low quality cells based on outlier detection.

### Usage

    plot_pca(features, annot, pca, col, output_file)

### Arguments

`features` | Input dataset containing features (cell x features)
`annot` | Matrix annotation of each cell
`pca` | PCA of features
`col` | color code indicating what color high and what low quality cells
`output_file` | where plot is stored

### Details

This function plots PCA of all features + most informative features

### Value

Plots of PCA

[Package cellity version 1.15.0 Index]