getEnVisionRawData {cellHTS2} | R Documentation

## Read a plate file obtain from EnVision Plate Reader

### Description

Import functions to read a plate file obtained from EnVision Plate Reader. These functions should be set as the import function of `readPlateList` through the argument `importFun` when reading plate result files obtained from EnVision plate reader.

### Usage

    getEnVisionRawData(f, p)
    getEnVisionCrosstalkCorrectedData(f, p)

### Arguments

`f` | the name of the result plate file to read.
`p` | capturing the additional path argument, which will actually be ignored. `f` is expected to be a fully resolved file path.

### Details

These functions should not be called directly. Instead, they should be set as the import function of `readPlateList` through the argument `importFun` when reading plate result files obtained from an EnVision plate reader.

### Value

These functions return a list with two components. The first component should be a 'data.frame' with the following slots: `well` (a character vector with the well identifier in the plate) and `val` (the intensity values measured at each well). The second component of this list should be a character vector containing a copy of the imported input data file (such as the output of `readLines`). It should be suitable to be used as input for `writeLines`.

### Author(s)

Ligia Bras ligia@ebi.ac.uk

### See Also

`readPlateList`

### Examples

        plateFile <- system.file("EnVisionExample/XXX_1500.csv", package = "cellHTS2")
        onePlate <- getEnVisionRawData(plateFile)

       ## to get the cross talk corrected data:
       onePlate2 <- getEnVisionCrosstalkCorrectedData(plateFile)

[Package cellHTS2 version 2.51.0 Index]