celdaHeatmap,celda_C-method {celda} | R Documentation

## Heatmap for celda_C

### Description

Renders an expression heatmap to visualize 'celda_C()' results. Features to include in the heatmap must be supplied.

### Usage

    ## S4 method for signature 'celda_C'
    celdaHeatmap(counts, celdaMod, featureIx, ...)

### Arguments

`counts` | Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.
`celdaMod` | Celda object of class 'celda_C'.
`featureIx` | Integer vector. Indices of features to plot, such the top features from a differential expression analysis.
`...` | Additional parameters.

### Value

list A list containing dendrograms and the heatmap grob

### See Also

'celda_C()' for clustering cells and 'celdaTsne()' for generating 2-dimensional coordinates

### Examples

    data(celdaCSim, celdaCMod)
    celdaHeatmap(celdaCSim$counts, celdaCMod)

[Package celda version 1.3.4 Index]