parseCMapID {cTRAP} | R Documentation

## Parse CMap identifier

### Description

Parse CMap identifier

### Usage

    parseCMapID(id, cellLine = FALSE)

### Arguments

`id` | Character: CMap identifier
`cellLine` | Boolean: if `TRUE`, return cell line information from CMap identifier; else, return the CMap identifier without the cell line

### Value

Character vector with information from CMap identifiers

### See Also

Other functions related with the ranking of CMap perturbations: `[.perturbationChanges`, `as.table.similarPerturbations`, `dim.perturbationChanges`, `dimnames.perturbationChanges`, `filterCMapMetadata`, `getCMapConditions`, `getCMapPerturbationTypes`, `loadCMapData`, `loadCMapZscores`, `plot.perturbationChanges`, `plot.referenceComparison`, `plotTargetingDrugsVSsimilarPerturbations`, `prepareCMapPerturbations`, `print.similarPerturbations`, `rankSimilarPerturbations`

### Examples

    id <- c("CVD001_HEPG2_24H:BRD-K94818765-001-01-0:4.8",
            "CVD001_HEPG2_24H:BRD-K96188950-001-04-5:4.3967",
            "CVD001_HUH7_24H:BRD-A14014306-001-01-1:4.1")
    parseCMapID(id, cellLine=TRUE)
    parseCMapID(id, cellLine=FALSE)

[Package cTRAP version 1.5.0 Index]