ID2Enzyme {brendaDb} | R Documentation

## A helper function for converting names/synonyms to EC numbers.

### Description

A helper function for converting names/synonyms to EC numbers.

### Usage

    ID2Enzyme(brenda, ids)

### Arguments

`brenda` | A `tibble` generated from `ReadBrenda()`.
`ids` | A character vector of IDs to be converted.

### Details

The function goes through "RECOMMENDED_NAME", "SYSTEMATIC_NAME", and "SYNONYMS" in the BRENDA file, and uses regexes to look for the given IDs. Values in the three columns are kept if the regex had a hit, otherwise NA is filled. The function can take in IDs of multiple sources, e.g. `c("ADH4", "CD38", "pyruvate dehydrogenase")`. Note that using aliases instead of symbols could lead to false positives in the output table.

### Value

A tibble with columns ID, EC, and at least one of (RECOMMENDED_NAME, SYSTEMATIC_NAME and SYNONYMS).

### Examples

    df <- ReadBrenda(system.file("extdata", "brenda_download_test.txt",
                              package = "brendaDb"))
    ID2Enzyme(df, c("CD38", "ADH4", "pyruvate dehydrogenase"))

[Package brendaDb version 1.1.3 Index]