20ac12b16f7245ae37b07845532bdee4 *DESCRIPTION
4b39c6f6c5c1cae40851f9bd7aad3d2a *INDEX
7be37d891ebe3f69f5bd6d0f6e112695 *Meta/Rd.rds
38eac93460f2b42a2f6d7b02342c0305 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
11020be6173b4d33d31234698908c04b *Meta/hsearch.rds
f8b1486c7a4c0688714cc40e232ca00e *Meta/links.rds
1c69ec6e405a6c80df8120a1d874130c *Meta/nsInfo.rds
bcc32739f2eb8a5670ed6e8985d05328 *Meta/package.rds
c6f8fb1828f5b3103bd37e9e4a77dbc7 *Meta/vignette.rds
4fd524212ec383ba47a49a031ee5af10 *NAMESPACE
f77e5430569c792149b7596240caa1e5 *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/biscuiteer
3145b1832d719902f778c72f204587cc *R/biscuiteer.rdb
ce4208aa7974b7bd926062fff549e1dc *R/biscuiteer.rdx
0adde9c30a80413435c5883fdbaf18ea *data/ENSR_subset.hg19.rda
b1355be5ec9d87afa92c617a211ceb9e *data/ENSR_subset.hg38.rda
d3b3899ba06144339ee83ba8fe4ba858 *data/GRCh37.chromArm.rda
ea35f87b69e6b1eee240462d3de1e647 *data/GRCh38.chromArm.rda
e9432085dba6233b4a53865985598fb2 *data/H9state23unmeth.hg19.rda
f942e9a779658c0d196a80bf2eb49a33 *data/H9state23unmeth.hg38.rda
bdbeb2f653476bd1c3812add4b1cfc0e *data/HMM_CpG_islands.hg19.rda
515534a7e5eb261dd9fd0e333d61b33c *data/HMM_CpG_islands.hg38.rda
3279b939a7b53ad38387447c4c9d2313 *data/clocks.rda
82f9894660885e9d11cba4aed146b513 *data/datalist
6869680f11325e482806c86b47151c77 *data/hg19.chromArm.rda
247bc9d7284208061b82dddc841ae191 *data/hg38.chromArm.rda
b6e4e4db1ef5838a88d1510221c32777 *data/seqinfo.hg19.rda
cd9fd1521718f84dc72b8ce64b9a5d7f *data/seqinfo.hg38.rda
d1226704e76cb1fcc92b52443320b337 *data/seqinfo.mm10.rda
2cf5a9826bfda4d1d01028d5993d4042 *doc/biscuiteer.R
f98e9c421f04bf730047078e3e80f71f *doc/biscuiteer.Rmd
49e360cc7cea2ff75c8430ed21dc0d5c *doc/biscuiteer.html
cdc7f49c14754d18b93edd50d3ed1529 *doc/biscuiteer.md
fd59ea6d8b1580f17f285940a639daa9 *doc/index.html
31048ae3d0a6b7953760336e638b86b7 *extdata/MCF7_Cunha_chr11p15.bed.gz
1971254c2e0f420e04d8119174949b1e *extdata/MCF7_Cunha_chr11p15.bed.gz.tbi
57b14e8560ff1cde06b7578b688f20af *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz
d6ff9139c2cd7728430fa6d969fe124a *extdata/MCF7_Cunha_chr11p15_shuffled.bed.gz.tbi
61309ab54074516a5b2973f632687741 *extdata/MCF7_Cunha_header_only.vcf.gz
d80cf4090040c37259bf284f3249834b *extdata/MCF7_Cunha_header_only.vcf.gz.tbi
cfb4a86e6b86ced7a5bce1e63ac54a11 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz
7b2b4a379f80df3f17e729eb04075171 *extdata/MCF7_Cunha_shuffled_header_only.vcf.gz.tbi
0ce8a985bef6bf213a2f7abe63238307 *help/AnIndex
63c5cf6eb81146254d5d864a74c68be5 *help/aliases.rds
8b6b8024cb0f948a5454024d1b902e66 *help/biscuiteer.rdb
a706848d6993679b727d59d49b6c05ff *help/biscuiteer.rdx
5d2f6bd0b0bd8b2b31bbc1f15caacf12 *help/paths.rds
9be858604c5bf58e3dc7ee55b6ea3729 *html/00Index.html
bfb6db11235406c08794e9e98f3c4474 *html/CpGindex.html
889cae6845b8a707acd0727b6648a876 *html/ENSR_subset.hg19.html
b965316e28ad88f0e785ba9bb8761a29 *html/ENSR_subset.hg38.html
a04673ee3a54c953da6909a6c83917e1 *html/GRCh37.chromArm.html
419a4b1b201559c12add750fc4504482 *html/GRCh38.chromArm.html
99fde13a680a02315cb1bfd48caee808 *html/H9state23unmeth.hg19.html
58221b4c7051f661e658e645ec7863c1 *html/H9state23unmeth.hg38.html
6bb8682f0cd7dc250049fb2f718d1e3c *html/HMM_CpG_islands.hg19.html
400c15ec960b1624839904f33af1c80d *html/HMM_CpG_islands.hg38.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
16bb60bcf7b83cfc6f247a0e86fd44b3 *html/RRBSeq.html
1ceded5dbed7cf570a3d960c90b89bed *html/WGBSage.html
1485def09a9f1917ce32bf64b053773b *html/WGBSeq.html
29aee0f9b509ac0307e85afe7723378e *html/atRegions.html
c1170c5031a670c3ac21ac8d387cb7e8 *html/binCoverage.html
e4747f76c9a689c0e1348599edf0cccd *html/biscuitMetadata.html
9554a50a447ff1f6358e214c08505156 *html/biscuiteer-methods.html
4e8732ccade83a057c80917d4d45580e *html/biscuiteer-package.html
478e0494ac059c5ecf012ce714f63014 *html/byChromArm.html
3ef15a5884f0675a19e047a45f355963 *html/byExtremality.html
cefc35ebf0981d07453094f45ebf033e *html/checkBiscuitBED.html
05324fb86ce84dffb45a94f0790e8bb8 *html/clocks.html
b44440b72297afb39587d3b838fd36f3 *html/condenseSampleNames.html
7ef92376840c74731ddc29caa5061c99 *html/extremality.html
cb6757e719a41329c8313776902ccf20 *html/fexpit.html
177f77e7509b2132ebcf160fa09987b3 *html/filterLoci.html
68b921dde25a4f21a7a871d3febbb53e *html/fixAge.html
ab24f7533e9a9989dc72cc6d16b6cae5 *html/fixNAs.html
9056efb95b405936e196719a8e7555fc *html/flogit.html
7e03cdb51c465d39ef044a9c952faba6 *html/getClock.html
52e9746de53f7de58f5424bda0350a70 *html/getLogitFracMeth.html
530d77da5f28fbadad7b4069316f8f62 *html/grToSeg.html
8c5d8ad88491a84dc07a509aaa219b65 *html/hg19.chromArm.html
2b3bc11056665e1d63f9a0eb6d4a6a3b *html/hg38.chromArm.html
929791cd70310a9964cbeca8100dd56f *html/makeBSseq.html
761e7b870ef752ba370453e193841d7e *html/readBiscuit.html
8559ddda2dd1ac141d22eb4810931f68 *html/segToGr.html
43e6d2fd178857dc9b5b5bb810eb88d9 *html/seqinfo.hg19.html
b6dc0c900546262b099c8847c22dd76a *html/seqinfo.hg38.html
a94c157b94e33110bcd001142bcc0127 *html/seqinfo.mm10.html
24101caf6d80c9a74796a06d6baa6fff *html/simplifySampleNames.html
2d22de3884ac728161000c9148493da9 *html/summarizeBsSeqOver.html
9464f8ac626f728d3820f890a389df14 *html/unionize.html
39c1310b90fe5a0de192833a7df9f3d7 *scripts/clocks.R
73a881932be92dd2a1594cbef6303e4a *scripts/extdataDescription.md
62b582af8bfe316884406f04f44d7606 *scripts/genShuffledMCF7CunhaBed.py
