unionize {biscuiteer} | R Documentation

## Combine bsseq objects together without losing information

### Description

Wrapper for the combine(bsseq1, ...) method in bsseq

### Usage

    unionize(bs1, ...)

### Arguments

`bs1` | A bsseq object
`...` | One or more bsseq objects to combine with bs1

### Details

Takes provided bsseq objects, the union of their GRanges, fills out the sites not in the union with 0M/0Cov, and returns the even-sparser bsseq holding all of them.

### Value

    A larger and more sparse bsseq object

### Examples

      shuf_bed <- system.file("extdata", "MCF7_Cunha_chr11p15_shuffled.bed.gz",
                              package="biscuiteer")
      orig_bed <- system.file("extdata", "MCF7_Cunha_chr11p15.bed.gz",
                              package="biscuiteer")
      shuf_vcf <- system.file("extdata",
                              "MCF7_Cunha_shuffled_header_only.vcf.gz",
                              package="biscuiteer")
      orig_vcf <- system.file("extdata",
                              "MCF7_Cunha_header_only.vcf.gz",
                              package="biscuiteer")
      bisc1 <- readBiscuit(BEDfile = shuf_bed, VCFfile = shuf_vcf,
                           merged = FALSE)
      bisc2 <- readBiscuit(BEDfile = orig_bed, VCFfile = orig_vcf,
                           merged = FALSE)

      comb <- unionize(bisc1, bisc2)

[Package biscuiteer version 1.1.0 Index]