indexes {ballgown} | R Documentation

## extract the indexes from ballgown objects

### Description

extract the indexes from ballgown objects

### Usage

    indexes(x)

    ## S4 method for signature 'ballgown'
    indexes(x)

### Arguments

`x` | a ballgown object

### Value

list containing elements `e2t`, `i2t`, `t2g`, `bamfiles`, and `pData`, where `e2t` and `i2t` are data frames linking exons and introns (respectively) to transcripts, `t2g` is a data frame linking transcripts to genes, and `bamfiles` and `pData` are described in `?ballgown`.

### Examples

    data(bg)
    names(indexes(bg))
    class(indexes(bg))
    head(indexes(bg)$t2g)

[Package ballgown version 2.19.3 Index]