relabu_boxplot {animalcules} | R Documentation

## Plot boxplots comparing different organism prevalence across conditions

### Description

Plot boxplots comparing different organism prevalence across conditions

### Usage

    relabu_boxplot(
      MAE,
      tax_level,
      condition,
      organisms = c(),
      datatype = c("counts", "relative abundance", "logcpm")
    )

### Arguments

`MAE` | A multi-assay experiment object
`tax_level` | The taxon level used for organisms
`condition` | Compare groups by condition e.g. 'SEX'
`organisms` | Include organisms for plotting.
`datatype` | counts, relative abundance,logcpm

### Value

A plotly object

### Examples

    data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
    toy_data <- readRDS(data_dir)
    p <- relabu_boxplot(toy_data,
                        tax_level='genus',
                        organisms=c('Escherichia', 'Actinomyces'),
                        condition='SEX',
                        datatype='logcpm')
    p

[Package animalcules version 1.3.6 Index]